Detailed information of SNP:
|
SNP ID:
sf0626674547(Gbrowse)
Chromosome: chr06 Position: 26674547 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 57.12% | 42.88% |
| All Indica | 799 | 94.49% | 5.51% |
| All Japonica | 496 | 0.81% | 99.19% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 93 | 1.08% | 98.92% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626674547 | A->C | INTERGENIC | None |