Detailed information of SNP:
|
SNP ID:
sf0626677992(Gbrowse)
Chromosome: chr06 Position: 26677992 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 60.97% | 39.03% |
| All Indica | 776 | 97.29% | 2.71% |
| All Japonica | 494 | 5.47% | 94.53% |
| Aus | 61 | 62.30% | 37.70% |
| Indica I | 363 | 99.45% | 0.55% |
| Indica II | 207 | 93.24% | 6.76% |
| Indica Intermediate | 206 | 97.57% | 2.43% |
| Temperate Japonica | 334 | 6.29% | 93.71% |
| Tropical Japonica | 92 | 6.52% | 93.48% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 60.98% | 39.02% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626677992 | A->G | INTERGENIC | None |