Detailed information of SNP:
|
SNP ID:
sf0626678000(Gbrowse)
Chromosome: chr06 Position: 26678000 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1224 | 93.46% | 6.54% |
| All Indica | 795 | 99.87% | 0.13% |
| All Japonica | 320 | 75.31% | 24.69% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 210 | 99.52% | 0.48% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 211 | 68.72% | 31.28% |
| Tropical Japonica | 65 | 89.23% | 10.77% |
| Japonica Intermediate | 44 | 86.36% | 13.64% |
| Group VI/Aromatic | 7 | 100.00% | 0.00% |
| Intermediate | 37 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626678000 | T->A | INTERGENIC | None |