Detailed information of SNP:
|
SNP ID:
sf0626698521(Gbrowse)
Chromosome: chr06 Position: 26698521 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 62.65% | 37.35% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 2.82% | 97.18% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 92.96% | 7.04% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 1.49% | 98.51% |
| Tropical Japonica | 94 | 9.57% | 90.43% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626698521 | T->G | LOC_Os06g44260(LOC_Os06g44260.1) | Non-Synonymous SNP |