Detailed information of SNP:
|
SNP ID:
sf0626718836(Gbrowse)
Chromosome: chr06 Position: 26718836 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 57.95% | 42.05% |
| All Indica | 796 | 34.42% | 65.58% |
| All Japonica | 497 | 97.38% | 2.62% |
| Aus | 67 | 31.34% | 68.66% |
| Indica I | 374 | 31.55% | 68.45% |
| Indica II | 212 | 16.51% | 83.49% |
| Indica Intermediate | 210 | 57.62% | 42.38% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626718836 | C->A | INTERGENIC | None |