Detailed information of SNP:
|
SNP ID:
sf0626729827(Gbrowse)
Chromosome: chr06 Position: 26729827 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1413 | 62.42% | 37.58% |
| All Indica | 794 | 36.15% | 63.85% |
| All Japonica | 497 | 99.40% | 0.60% |
| Aus | 67 | 83.58% | 16.42% |
| Indica I | 372 | 34.68% | 65.32% |
| Indica II | 212 | 17.92% | 82.08% |
| Indica Intermediate | 210 | 57.14% | 42.86% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626729827 | G->A | LOC_Os06g44290(LOC_Os06g44290.1) | INTRON |