Detailed information of SNP:
|
SNP ID:
sf0626797270(Gbrowse)
Chromosome: chr06 Position: 26797270 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 74.74% | 25.26% |
| All Indica | 797 | 59.47% | 40.53% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 373 | 55.50% | 44.50% |
| Indica II | 213 | 81.69% | 18.31% |
| Indica Intermediate | 211 | 44.08% | 55.92% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626797270 | A->T | INTERGENIC | None |