Detailed information of SNP:
|
SNP ID:
sf0626802083(Gbrowse)
Chromosome: chr06 Position: 26802083 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 61.52% | 38.48% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626802083 | T->C | LOC_Os06g44400(LOC_Os06g44400.1) | Synonymous |