Detailed information of SNP:
|
SNP ID:
sf0626804560(Gbrowse)
Chromosome: chr06 Position: 26804560 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 60.87% | 39.13% |
| All Indica | 797 | 97.99% | 2.01% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 36 | 86.11% | 13.89% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 38 | 65.79% | 34.21% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626804560 | T->A | INTERGENIC | None |