Detailed information of SNP:
|
SNP ID:
sf0626846487(Gbrowse)
Chromosome: chr06 Position: 26846487 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 77.44% | 22.56% |
| All Indica | 794 | 62.72% | 37.28% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 73.13% | 26.87% |
| Indica I | 372 | 60.48% | 39.52% |
| Indica II | 211 | 47.87% | 52.13% |
| Indica Intermediate | 211 | 81.52% | 18.48% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626846487 | G->A | INTERGENIC | None |