Detailed information of SNP:
|
SNP ID:
sf0626852376(Gbrowse)
Chromosome: chr06 Position: 26852376 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1386 | 62.48% | 37.52% |
| All Indica | 796 | 98.62% | 1.38% |
| All Japonica | 497 | 3.62% | 96.38% |
| Aus | 40 | 90.00% | 10.00% |
| Indica I | 374 | 100.00% | 0.00% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 15.96% | 84.04% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 12 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626852376 | A->C | INTERGENIC | None |