Detailed information of SNP:
|
SNP ID:
sf0626872276(Gbrowse)
Chromosome: chr06 Position: 26872276 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1407 | 50.96% | 49.04% |
| All Indica | 789 | 83.40% | 16.60% |
| All Japonica | 497 | 0.60% | 99.40% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 371 | 85.98% | 14.02% |
| Indica II | 209 | 79.90% | 20.10% |
| Indica Intermediate | 209 | 82.30% | 17.70% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626872276 | C->A | INTERGENIC | None |