Detailed information of SNP:
|
SNP ID:
sf0626887123(Gbrowse)
Chromosome: chr06 Position: 26887123 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 62.55% | 37.45% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 496 | 3.23% | 96.77% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 13.83% | 86.17% |
| Japonica Intermediate | 67 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626887123 | A->G | INTERGENIC | None |