Detailed information of SNP:
|
SNP ID:
sf0626892002(Gbrowse)
Chromosome: chr06 Position: 26892002 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 63.20% | 36.80% |
| All Indica | 798 | 98.62% | 1.38% |
| All Japonica | 492 | 2.85% | 97.15% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 89 | 11.24% | 88.76% |
| Japonica Intermediate | 68 | 1.47% | 98.53% |
| Group VI/Aromatic | 14 | 14.29% | 85.71% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626892002 | G->A | INTERGENIC | None |