Detailed information of SNP:
|
SNP ID:
sf0626901290(Gbrowse)
Chromosome: chr06 Position: 26901290 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 65.07% | 34.93% |
| All Indica | 799 | 98.50% | 1.50% |
| All Japonica | 479 | 5.22% | 94.78% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 0.93% | 99.07% |
| Tropical Japonica | 92 | 19.57% | 80.43% |
| Japonica Intermediate | 65 | 6.15% | 93.85% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 75.61% | 24.39% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626901290 | A->G | INTERGENIC | None |