Detailed information of SNP:
|
SNP ID:
sf0626919672(Gbrowse)
Chromosome: chr06 Position: 26919672 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1355 | 94.61% | 5.39% |
| All Indica | 736 | 90.90% | 9.10% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 341 | 89.74% | 10.26% |
| Indica II | 206 | 93.69% | 6.31% |
| Indica Intermediate | 189 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 90.24% | 9.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626919672 | G->A | LOC_Os06g44580(LOC_Os06g44580.1) | Non-Synonymous SNP |