Detailed information of SNP:
|
SNP ID:
sf0626920890(Gbrowse)
Chromosome: chr06 Position: 26920890 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 96.57% | 3.43% |
| All Indica | 784 | 96.81% | 3.19% |
| All Japonica | 494 | 95.75% | 4.25% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 367 | 95.91% | 4.09% |
| Indica II | 208 | 97.12% | 2.88% |
| Indica Intermediate | 209 | 98.09% | 1.91% |
| Temperate Japonica | 334 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 82.80% | 17.20% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626920890 | C->T | LOC_Os06g44590(LOC_Os06g44590.1) | Non-Synonymous SNP |