Detailed information of SNP:
|
SNP ID:
sf0626934794(Gbrowse)
Chromosome: chr06 Position: 26934794 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 92.75% | 7.25% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 391 | 75.70% | 24.30% |
| Aus | 66 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 254 | 74.02% | 25.98% |
| Tropical Japonica | 85 | 95.29% | 4.71% |
| Japonica Intermediate | 52 | 51.92% | 48.08% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626934794 | T->A | INTERGENIC | None |