Detailed information of SNP:
|
SNP ID:
sf0626941373(Gbrowse)
Chromosome: chr06 Position: 26941373 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1416 | 62.29% | 37.71% |
| All Indica | 796 | 94.22% | 5.78% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 79.72% | 20.28% |
| Indica Intermediate | 209 | 99.04% | 0.96% |
| Temperate Japonica | 335 | 2.09% | 97.91% |
| Tropical Japonica | 94 | 35.11% | 64.89% |
| Japonica Intermediate | 68 | 8.82% | 91.18% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626941373 | G->T | INTERGENIC | None |