Detailed information of SNP:
|
SNP ID:
sf0626989682(Gbrowse)
Chromosome: chr06 Position: 26989682 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 97.07% | 2.93% |
| All Indica | 778 | 94.86% | 5.14% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 368 | 95.92% | 4.08% |
| Indica II | 208 | 93.27% | 6.73% |
| Indica Intermediate | 202 | 94.55% | 5.45% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626989682 | G->T | LOC_Os06g44710(LOC_Os06g44710.1) | INTRON |