Detailed information of SNP:
|
SNP ID:
sf0626989914(Gbrowse)
Chromosome: chr06 Position: 26989914 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 96.61% | 3.39% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 66 | 54.55% | 45.45% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0626989914 | C->T | LOC_Os06g44710(LOC_Os06g44710.1) | Synonymous |