Detailed information of SNP:
|
SNP ID:
sf0627001375(Gbrowse)
Chromosome: chr06 Position: 27001375 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1400 | 87.21% | 12.79% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 478 | 64.23% | 35.77% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 322 | 66.46% | 33.54% |
| Tropical Japonica | 89 | 67.42% | 32.58% |
| Japonica Intermediate | 67 | 49.25% | 50.75% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627001375 | G->A | LOC_Os06g44730(LOC_Os06g44730.1) | Non-Synonymous SNP |