Detailed information of SNP:
|
SNP ID:
sf0627017312(Gbrowse)
Chromosome: chr06 Position: 27017312 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1412 | 97.52% | 2.48% |
| All Indica | 799 | 99.25% | 0.75% |
| All Japonica | 490 | 95.10% | 4.90% |
| Aus | 67 | 92.54% | 7.46% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 332 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 77.17% | 22.83% |
| Japonica Intermediate | 66 | 96.97% | 3.03% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627017312 | G->A | INTERGENIC | None |