Detailed information of SNP:
|
SNP ID:
sf0627046038(Gbrowse)
Chromosome: chr06 Position: 27046038 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 62.24% | 37.76% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 65 | 81.54% | 18.46% |
| Indica I | 375 | 98.40% | 1.60% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 71.43% | 28.57% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627046038 | G->A | LOC_Os06g44770(LOC_Os06g44770.1) | INTRON |