Detailed information of SNP:



SNP ID: sf0627105017(Gbrowse)

Chromosome: chr06

Position: 27105017
Major allele: C

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1416 59.46% 40.54%
All Indica798 96.99% 3.01%
All Japonica496 1.61% 98.39%
Aus67 31.34% 68.66%
Indica I374 99.20% 0.80%
Indica II213 92.96% 7.04%
Indica Intermediate211 97.16% 2.84%
Temperate Japonica335 0.90% 99.10%
Tropical Japonica93 2.15% 97.85%
Japonica Intermediate68 4.41% 95.59%
Group VI/Aromatic14 92.86% 7.14%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0627105017 T->C INTERGENIC None