Detailed information of SNP:
|
SNP ID:
sf0627149444(Gbrowse)
Chromosome: chr06 Position: 27149444 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 63.33% | 36.67% |
| All Indica | 799 | 98.87% | 1.13% |
| All Japonica | 496 | 4.23% | 95.77% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 18.09% | 81.91% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 73.81% | 26.19% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627149444 | G->A | LOC_Os06g44900(LOC_Os06g44900.1) | Non-Synonymous SNP |