Detailed information of SNP:
|
SNP ID:
sf0627150719(Gbrowse)
Chromosome: chr06 Position: 27150719 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 50.95% | 49.05% |
| All Indica | 799 | 18.77% | 81.23% |
| All Japonica | 497 | 96.38% | 3.62% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 375 | 7.73% | 92.27% |
| Indica II | 213 | 27.23% | 72.77% |
| Indica Intermediate | 211 | 29.86% | 70.14% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627150719 | A->C | LOC_Os06g44910(LOC_Os06g44910.1) | Synonymous |
| sf0627150719 | A->C | LOC_Os06g44910(LOC_Os06g44910.2) | Synonymous |