Detailed information of SNP:
|
SNP ID:
sf0627173902(Gbrowse)
Chromosome: chr06 Position: 27173902 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1413 | 59.45% | 40.55% |
| All Indica | 793 | 97.35% | 2.65% |
| All Japonica | 497 | 0.80% | 99.20% |
| Aus | 67 | 55.22% | 44.78% |
| Indica I | 371 | 97.84% | 2.16% |
| Indica II | 212 | 95.28% | 4.72% |
| Indica Intermediate | 210 | 98.57% | 1.43% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627173902 | T->C | INTERGENIC | None |