Detailed information of SNP:
|
SNP ID:
sf0627238249(Gbrowse)
Chromosome: chr06 Position: 27238249 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1383 | 95.52% | 4.48% |
| All Indica | 763 | 92.27% | 7.73% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 368 | 97.28% | 2.72% |
| Indica II | 197 | 85.79% | 14.21% |
| Indica Intermediate | 198 | 89.39% | 10.61% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627238249 | G->A | INTERGENIC | None |