Detailed information of SNP:
|
SNP ID:
sf0627241610(Gbrowse)
Chromosome: chr06 Position: 27241610 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1413 | 51.73% | 48.27% |
| All Indica | 794 | 88.41% | 11.59% |
| All Japonica | 497 | 0.40% | 99.60% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 370 | 88.65% | 11.35% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 86.26% | 13.74% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627241610 | C->T | INTERGENIC | None |