Detailed information of SNP:
|
SNP ID:
sf0627258505(Gbrowse)
Chromosome: chr06 Position: 27258505 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1348 | 98.37% | 1.63% |
| All Indica | 798 | 100.00% | 0.00% |
| All Japonica | 432 | 94.91% | 5.09% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 297 | 92.93% | 7.07% |
| Tropical Japonica | 76 | 100.00% | 0.00% |
| Japonica Intermediate | 59 | 98.31% | 1.69% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627258505 | T->C | LOC_Os06g45050(LOC_Os06g45050.1) | INTRON |