Detailed information of SNP:
|
SNP ID:
sf0627262570(Gbrowse)
Chromosome: chr06 Position: 27262570 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 54.66% | 45.34% |
| All Indica | 797 | 22.46% | 77.54% |
| All Japonica | 497 | 99.80% | 0.20% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 10.67% | 89.33% |
| Indica II | 212 | 34.43% | 65.57% |
| Indica Intermediate | 210 | 31.43% | 68.57% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 43.90% | 56.10% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627262570 | G->A | LOC_Os06g45070(LOC_Os06g45070.2) | INTRON |
| sf0627262570 | G->A | LOC_Os06g45070(LOC_Os06g45070.1) | INTRON |