Detailed information of SNP:
|
SNP ID:
sf0627272918(Gbrowse)
Chromosome: chr06 Position: 27272918 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 53.67% | 46.33% |
| All Indica | 798 | 91.73% | 8.27% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 94.40% | 5.60% |
| Indica II | 213 | 88.73% | 11.27% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 66.67% | 33.33% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627272918 | G->T | LOC_Os06g45090(LOC_Os06g45090.1) | INTRON |
| sf0627272918 | G->T | LOC_Os06g45090(LOC_Os06g45090.2) | INTRON |