Detailed information of SNP:
|
SNP ID:
sf0627446081(Gbrowse)
Chromosome: chr06 Position: 27446081 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1345 | 95.69% | 4.31% |
| All Indica | 727 | 92.02% | 7.98% |
| All Japonica | 496 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 331 | 87.01% | 12.99% |
| Indica II | 195 | 97.44% | 2.56% |
| Indica Intermediate | 201 | 95.02% | 4.98% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627446081 | C->T | LOC_Os06g45399(LOC_Os06g45399.1) | INTRON |