Detailed information of SNP:
|
SNP ID:
sf0627525241(Gbrowse)
Chromosome: chr06 Position: 27525241 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 56.73% | 43.27% |
| All Indica | 799 | 97.12% | 2.88% |
| All Japonica | 497 | 1.01% | 98.99% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627525241 | G->T | INTERGENIC | None |