Detailed information of SNP:
|
SNP ID:
sf0627585704(Gbrowse)
Chromosome: chr06 Position: 27585704 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1218 | 87.52% | 12.48% |
| All Indica | 714 | 99.72% | 0.28% |
| All Japonica | 390 | 62.31% | 37.69% |
| Aus | 60 | 100.00% | 0.00% |
| Indica I | 336 | 99.40% | 0.60% |
| Indica II | 179 | 100.00% | 0.00% |
| Indica Intermediate | 199 | 100.00% | 0.00% |
| Temperate Japonica | 263 | 46.01% | 53.99% |
| Tropical Japonica | 74 | 95.95% | 4.05% |
| Japonica Intermediate | 53 | 96.23% | 3.77% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627585704 | A->T | LOC_Os06g45560(LOC_Os06g45560.1) | INTRON |