Detailed information of SNP:
|
SNP ID:
sf0627786334(Gbrowse)
Chromosome: chr06 Position: 27786334 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1346 | 93.02% | 6.98% |
| All Indica | 790 | 99.87% | 0.13% |
| All Japonica | 435 | 79.08% | 20.92% |
| Aus | 65 | 100.00% | 0.00% |
| Indica I | 369 | 99.73% | 0.27% |
| Indica II | 212 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 100.00% | 0.00% |
| Temperate Japonica | 283 | 73.85% | 26.15% |
| Tropical Japonica | 87 | 94.25% | 5.75% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627786334 | G->T | LOC_Os06g45900(LOC_Os06g45900.1) | INTRON |