Detailed information of SNP:
|
SNP ID:
sf0627835231(Gbrowse)
Chromosome: chr06 Position: 27835231 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1183 | 52.07% | 47.93% |
| All Indica | 691 | 22.00% | 78.00% |
| All Japonica | 377 | 98.94% | 1.06% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 313 | 14.70% | 85.30% |
| Indica II | 185 | 4.32% | 95.68% |
| Indica Intermediate | 193 | 50.78% | 49.22% |
| Temperate Japonica | 253 | 98.81% | 1.19% |
| Tropical Japonica | 71 | 98.59% | 1.41% |
| Japonica Intermediate | 53 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 35 | 34.29% | 65.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627835231 | C->A | INTERGENIC | None |