Detailed information of SNP:
SNP ID:
sf0627875341(Gbrowse)
Chromosome: chr06 Position: 27875341 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
---|---|---|---|
All | 1417 | 98.02% | 1.98% |
All Indica | 797 | 99.87% | 0.13% |
All Japonica | 497 | 94.57% | 5.43% |
Aus | 67 | 100.00% | 0.00% |
Indica I | 374 | 99.73% | 0.27% |
Indica II | 213 | 100.00% | 0.00% |
Indica Intermediate | 210 | 100.00% | 0.00% |
Temperate Japonica | 335 | 91.94% | 8.06% |
Tropical Japonica | 94 | 100.00% | 0.00% |
Japonica Intermediate | 68 | 100.00% | 0.00% |
Group VI/Aromatic | 14 | 100.00% | 0.00% |
Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
SNP ID | Var | Gene | Effect/Location |
---|---|---|---|
sf0627875341 | C->T | LOC_Os06g45990(LOC_Os06g45990.2) | Non-Synonymous SNP |
sf0627875341 | C->T | LOC_Os06g45990(LOC_Os06g45990.1) | Non-Synonymous SNP |