Detailed information of SNP:
|
SNP ID:
sf0627880903(Gbrowse)
Chromosome: chr06 Position: 27880903 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 82.88% | 17.12% |
| All Indica | 799 | 77.47% | 22.53% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 67 | 41.79% | 58.21% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 78.40% | 21.60% |
| Indica Intermediate | 211 | 51.66% | 48.34% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627880903 | G->A | INTERGENIC | None |