Detailed information of SNP:
|
SNP ID:
sf0627960758(Gbrowse)
Chromosome: chr06 Position: 27960758 |
Major allele:
C
Minor allele: A Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 91.54% | 8.46% |
| All Indica | 799 | 85.36% | 14.64% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 61.61% | 38.39% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627960758 | C->A | LOC_Os06g46149(LOC_Os06g46149.2) | INTRON |
| sf0627960758 | C->A | LOC_Os06g46149(LOC_Os06g46149.1) | INTRON |