Detailed information of SNP:
|
SNP ID:
sf0627980062(Gbrowse)
Chromosome: chr06 Position: 27980062 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1347 | 63.92% | 36.08% |
| All Indica | 766 | 54.57% | 45.43% |
| All Japonica | 494 | 81.98% | 18.02% |
| Aus | 35 | 22.86% | 77.14% |
| Indica I | 365 | 45.21% | 54.79% |
| Indica II | 212 | 62.74% | 37.26% |
| Indica Intermediate | 189 | 63.49% | 36.51% |
| Temperate Japonica | 333 | 76.58% | 23.42% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 11 | 72.73% | 27.27% |
| Intermediate | 41 | 53.66% | 46.34% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627980062 | A->G | INTERGENIC | None |