Detailed information of SNP:
|
SNP ID:
sf0627982081(Gbrowse)
Chromosome: chr06 Position: 27982081 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 93.23% | 6.77% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 83.90% | 16.10% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 76.42% | 23.58% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627982081 | T->C | LOC_Os06g46170(LOC_Os06g46170.1) | Non-Synonymous SNP |