Detailed information of SNP:
|
SNP ID:
sf0627985719(Gbrowse)
Chromosome: chr06 Position: 27985719 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 93.09% | 6.91% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 76.12% | 23.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627985719 | A->G | LOC_Os06g46180(LOC_Os06g46180.1) | Non-Synonymous SNP |