Detailed information of SNP:



SNP ID: sf0627985719(Gbrowse)

Chromosome: chr06

Position: 27985719
Major allele: A

Minor allele: G

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of A(major allele)Frequency of G(minor allele)
All1418 93.09% 6.91%
All Indica799 98.62% 1.38%
All Japonica497 83.70% 16.30%
Aus66 93.94% 6.06%
Indica I375 99.20% 0.80%
Indica II213 100.00% 0.00%
Indica Intermediate211 96.21% 3.79%
Temperate Japonica335 76.12% 23.88%
Tropical Japonica94 100.00% 0.00%
Japonica Intermediate68 98.53% 1.47%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 95.24% 4.76%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0627985719 A->G LOC_Os06g46180(LOC_Os06g46180.1) Non-Synonymous SNP