Detailed information of SNP:
|
SNP ID:
sf0627989545(Gbrowse)
Chromosome: chr06 Position: 27989545 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1415 | 92.79% | 7.21% |
| All Indica | 798 | 98.75% | 1.25% |
| All Japonica | 497 | 83.70% | 16.30% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 76.12% | 23.88% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 13 | 76.92% | 23.08% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627989545 | C->G | LOC_Os06g46180(LOC_Os06g46180.1) | Non-Synonymous SNP |