Detailed information of SNP:
|
SNP ID:
sf0627990732(Gbrowse)
Chromosome: chr06 Position: 27990732 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1408 | 94.18% | 5.82% |
| All Indica | 797 | 99.12% | 0.88% |
| All Japonica | 488 | 85.86% | 14.14% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 212 | 98.58% | 1.42% |
| Indica Intermediate | 210 | 99.52% | 0.48% |
| Temperate Japonica | 326 | 79.14% | 20.86% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0627990732 | G->A | INTERGENIC | None |