Detailed information of SNP:
|
SNP ID:
sf0628004556(Gbrowse)
Chromosome: chr06 Position: 28004556 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 86.54% | 13.46% |
| All Indica | 799 | 81.98% | 18.02% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 40.30% | 59.70% |
| Indica I | 375 | 89.87% | 10.13% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 52.13% | 47.87% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628004556 | C->T | INTERGENIC | None |