Detailed information of SNP:
|
SNP ID:
sf0628020637(Gbrowse)
Chromosome: chr06 Position: 28020637 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 62.60% | 37.40% |
| All Indica | 798 | 57.89% | 42.11% |
| All Japonica | 496 | 63.91% | 36.09% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 61.50% | 38.50% |
| Indica II | 213 | 39.44% | 60.56% |
| Indica Intermediate | 211 | 70.14% | 29.86% |
| Temperate Japonica | 334 | 82.93% | 17.07% |
| Tropical Japonica | 94 | 11.70% | 88.30% |
| Japonica Intermediate | 68 | 42.65% | 57.35% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628020637 | G->A | LOC_Os06g46260(LOC_Os06g46260.1) | INTRON |