Detailed information of SNP:
|
SNP ID:
sf0628038468(Gbrowse)
Chromosome: chr06 Position: 28038468 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 92.10% | 7.90% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 495 | 77.58% | 22.42% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 70.75% | 29.25% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 66 | 84.85% | 15.15% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628038468 | A->G | LOC_Os06g46270(LOC_Os06g46270.1) | INTRON |