Detailed information of SNP:
|
SNP ID:
sf0628048670(Gbrowse)
Chromosome: chr06 Position: 28048670 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1419 | 91.05% | 8.95% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 497 | 78.87% | 21.13% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 71.34% | 28.66% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0628048670 | T->C | LOC_Os06g46284(LOC_Os06g46284.1) | INTRON |
| sf0628048670 | T->C | LOC_Os06g46284(LOC_Os06g46284.2) | INTRON |